CBEA - Competitive Balances for Taxonomic Enrichment Analysis in R
This package implements CBEA, a method to perform set-based analysis for microbiome relative abundance data. This approach constructs a competitive balance between taxa within the set and remainder taxa per sample. More details can be found in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions to help users perform taxa-set enrichment analyses using existing gene set analysis methods. In the future we hope to also provide curated knowledge driven taxa sets.
Last updated 28 days ago
softwaremicrobiomemetagenomicsgenesetenrichmentdataimportenrichment-analysistaxonomic-enrichment-analysis
4.74 score 5 stars 11 scripts 206 downloadsSBICgraph - Structural Bayesian Information Criterion for Graphical Models
This is the implementation of the novel structural Bayesian information criterion by Zhou, 2020 (under review). In this method, the prior structure is modeled and incorporated into the Bayesian information criterion framework. Additionally, we also provide the implementation of a two-step algorithm to generate the candidate model pool.
Last updated 4 years ago
2.70 score 3 scripts 100 downloads